Tentative calendar for Genetic Markers, Fall 2004

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Week starting Tuesday (lecture) (* means homework due) Thursday (lab./practicum) Readings (minimum)
31-Aug Introduction to molecular markers: I Intro. to computer software Ch. 1 Avise; Ch. 7 Mol. Syst. (pp. 205-221 only); handout (Hoelzel & Dover)
7-Sep Introduction to molecular markers: II  Software practicum - phylogeny programs  * McD. reprints; Avise pp. 44-109
14-Sep Phylogenetics  Software practicum - PHYLIP et al.  * Avise Ch. 2, pp. 109-126; Ch. 11 Mol. Syst.; 
21-Sep Phylogenetics  Software practicum - MacClade et al.  * Mol. Syst. pp. 249-281, pp. 321-341; Ch. 3 Mol. Zool.
28-Sep Population genetics  Tour of microsatellite lab.; introduction to some pop. gen. programs  * Brookfield. 1996. Curr. Biol. 6: 354; Gillespie text Ch. 1; Avise pp. 204-233;
5-Oct Population genetics & coalescent theory  Guest lecture by Dr. Rob Fleischer, National Zoo
(Hawaiian honeycreepers)
Gillespie text Ch. 2, Appendices A & B; Luikart 1999. TREE 14: 253; 
12-Oct Population genetics  Software practicum - population structure  *   McD in Alabama Gillespie text Ch. 4; Davies et al. 1999. TREE 14: 17
19-Oct Population genetics  Midterm exam 21 Oct. (in class; open book)  * Amos & Harwood 1998. PRSLB 353:177
26-Oct Phylogeography  Software practicum - population structure   * Avise pp. 233-251; Piertney et al. ptarmigan papers
2-Nov Individual ID & parentage  Software practicum - Cervus  * Avise Ch. 5; Ch. 7 Mol. Zool.
9-Nov Relatedness  Software practicum - Kinship  * Avise pp. 190-233; Queller et al. 1993 TREE 8: 285; Sugg. 1996. TREE 11: 338
16-Nov Speciation & hybridization  Software practicum - population structure * Avise pp. 126-138, Ch. 7
23-Nov Conservation genetics  Thanksgiving Avise Ch. 9: Hedrick & Miller 1992 Ecol. Applic. 2: 30; Haig. 1998. Ecol. 79: 413
30-Nov Conservation genetics  Software practicum - conservation genetics  * Avise & Hamrick 1996, Ch. 14 & other chapter of your choice ; Milligan 1994. Mol. Ecol. 3: 423 
7-Dec Project presentation  Examination 7 Dec.
(open book)  *
Crozier 1997. ARES 28: 243
14-Dec "Written" projects due 16 Dec.   

Last Updated on 8/30/04
By Dave McDonald