Faculty Publications Faculty and Affiliate Publications

Program in Ecology

2009 to present

A-D   E-H    I-L    M-P    Q-T    U-Z  

Shannon Albeke

Albeke, S.E., N. P. Nibbelink, L. Mu and D. J. Ellsworth. 2010.  Measuring boundary convexity at multiple spatial scales using a linear "moving window" analysis:  an application to coastal river otter habitat selection.  Landscape Ecology 25(10): 1575-1587.

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Jeffrey Beck

Doherty, K. E., J. L. Beck, and D. E. Naugle 2011.  Comparing ecological site descriptions to habitat characteristics influencing greater sage-grouse nest site occurrence and success. Rangeland Ecology and Management 64(4).

Beck, J. L., R. C. Skorkowsky, and G. D. Hayward.  2011.  Estimating occupancy to monitor northern goshawk in the central Rocky Mountains.  Journal of Wildlife Management 75:513-524. doi: 10.1002/jwmg.6

Beck, J. L., D. C. Dauwalter, K. G. Gerow, G. D. Hayward.  2010.  Design to monitor trend in abundance and presence of American beaver ( Castor canadensis) at the national forest scale. Environmental Monitoring and Assessment 164:463-479. doi: 10.1007/s10661-009-0907-8

Beck, J. L., J. W. Connelly, and K. P. Reese.  2009.  Recovery of greater sage-grouse habitat features in Wyoming big sagebrush following prescribed fire.  Restoration Ecology 17:393-403.  doi: 10.1111/j.1526-100X.2008.00380.x

Beck, J.L. and L. H. Suring.  2009.  Wildlife habitat-relationships models: description and evaluation of existing frameworks.  Pages 251-285 in J. J. Millspaugh, and F. R. Thompson, III, editors.  Models for Planning Wildlife Conservation in Large Landscapes.  Elsevier Science, Amsterdam, Netherlands.

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Craig Benkman

Benkman, C. W.,  A. M. Siepielski, and J. W. Smith. 2011. Consequences of trait evolution in a multi-species system. In Ecology and evolution of trait-mediated indirect interactions: linking evolution, community, and ecosystem. T. Ohgushi, O. Schmitz, and R. D. Holt, eds. Cambridge University Press.

Benkman, C. W., and A. M. Siepielski. 2011. Sources and sinks in the evolution and persistence of mutualisms. In Sources, Sinks, and Sustainability. J. Liu, V. Hull, A. Morzillo, and J. Wiens, eds. Cambridge University Press.

Myczko, Ł., and C. W.Benkman. 2011. Great Spotted Woodpeckers exert multiple forms of phenotypic selection on Scots pine . Journal of Avian Biology, in press.

Parchman, T. L., C. W. Benkman, B. Jenkins, and C. A. Buerkle. 2011. Low levels of population genetic structure in lodgepole pine across a geographic mosaic of coevolution. American Journal of Botany 98:669-679.

Benkman C. W., T. L. Parchman, and E. T. Mezquida. 2010. Patterns of coevolution in the adaptive radiation of crossbills. Annals of the New York Academy of Sciences 1206:1-16.

Berry, R. B., C. W. Benkman, A. Muela, Y. Seminario, and M. Curti. 2010. Isolation and decline of an Orange-breasted Falcon population. Condor 112:479-489.

Parchman, T. L., K. S. Geist, J. A. Grahnen, C. W. Benkman and C. A. Buerkle. 2010. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics 11:180.

Benkman, C. W. Diversifying coevolution between crossbills and conifers. 2010. Evolution: Education and Outreach 3:47-53.

Siepielski, A. M., and C. W. Benkman. 2010. Conflicting selection from an antagonist and a mutualist enhances phenotypic variation in a plant. Evolution 64:1120-1128.

Mezquida, E. T., and C. W. Benkman. 2010. Habitat area and structure affect the impact of seed predators and the potential for coevolutionary arms races. Ecology 91:802-814.

Benkman, C. W., and T. L. Parchman. 2009. Coevolution between crossbills and black pine: the importance of competitors, forest area, and resource stability. Journal of Evolutionary Biology 22:942-953.

Garcia, R., A. M. Siepielski, and C. W. Benkman. 2009. Cone and seed trait variation in whitebark pine Pinus albicaulis (Pinaceae) and the potential for phenotypic selection. American Journal of Botany 96:1050-1054.

Snowberg, L. K., and C. W. Benkman. 2009. Mate choice based on a key ecological performance trait. Journal of Evolutionary Biology 22:762-769.

Benkman, C. W., J. W. Smith, P. C. Keenan, T. L. Parchman, and L. Santisteban. 2009. A new species of red crossbill (Fringillidae: Loxia) from Idaho. Condor 111:169-176.

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Alex Buerkle

Gompert, Z. and C. A. Buerkle. 2011. Bayesian estimation of genomic clines. Molecular Ecology 20: 2111-2127.

Parchman, T. L., C. W. Benkman, B. Jenkins, and C. A. Buerkle. 2011. Low levels of population genetic structure in lodgepole pine across a geographic mosaic of coevolution. American Journal of Botany 98: 669-679.

Buerkle, C. A., Z. Gompert, and T. L. Parchman. 2011. The n=1 constraint in population genomics. Molecular Ecology 20: 1575-1581.

Gompert, Z. and C. A. Buerkle. 2011. A hierarchical Bayesian model for next-generation population genomics. Genetics 187: 903-917.

Nosil, P. and C. A. Buerkle. 2010. Population Genomics. Nature Education Knowledge 1(11):8.

Lexer, C., J. Joseph, M. van Loo, T. Barbara, B. Heinze, D. Bartha, S. Castiglione, M. F. Fay and C. A. Buerkle. 2010. Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating. Genetics 186: 699-712.

Gompert, Z., M. L. Forister, J. A. Fordyce, C. C. Nice, R. J. Williamson and C. A. Buerkle. 2010. Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies. Molecular Ecology 19: 2455- 2473.

Parchman, T.L., K. S. Geist, J. A. Grahnen, C. W. Benkman and C. A. Buerkle. 2010. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics 11: 180.

Gompert, Z. and C. A. Buerkle. 2010. introgress: a software package for mapping components of isolation in hybrids. Molecular Ecology Resources 10: 378-384.

Scascitelli, M., K. D. Whitney, R. A. Randell, M. King, C. A. Buerkle and L. H. Rieseberg. 2010. Genome scan of hybridizing sunflowers from Texas (Helianthus annuus and H. debilis) reveals asymmetric patterns of introgression and small islands of genomic dif- ferentiation. Molecular Ecology 19: 521-541.

Teeter, K. C., L. M. Thibodeau, Z. Gompert, C. A. Buerkle, M. W. Nachman, and P. K. Tucker. 2010. The variable genomic architecture of isolation between hybridizing species of house mice. Evolution 64: 472-485.

Nolte, A., Z. Gompert and C. A. Buerkle. 2009. Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations. Molecular Ecology 18: 2615-2627.

Buerkle, C. A. 2009. Ecological context shapes hybridization dynamics. Molecular Ecology 18: 2077-2079.

Gompert, Z. and C. A. Buerkle. 2009. A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Molecular Ecology 18: 1207-1224.

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Indy Burke

Adair, E. A. and I. C. Burke. 2010. Plant phenology and life span influence soil pool dynamics: Bromus tectorum invasion of perennial C3-C4 grass communities. Plant and Soil 335:255-269

Currie, W. S., M. E. Harmon, I. C. Burke, S. C. Hart, W. J. Parton, and W. Silver. 2010.  Cross-biome transplants of plant litter show decomposition models extend to a broader climatic range but low predictability at the decadal time scale. Global Change Biology 16: 1744-1761.

Munson, S. M., T. J. Benton, W. K. Lauenroth, and I. C. Burke. 2010. Soil carbon flux following pulse precipitation events in the shortgrass steppe.  Ecological Research, 25: 205-211.

Bontti, E. E., J. P. DeCant, S. M. Munson, M. Gathany, A. Przeszlowska, M. L. Haddix, S. M. Owens , I. C. Burke, W. J. Parton, and M. E. Harmon. 2009. Litter decomposition in grasslands of Central North America (US Great Plains). Global Change Biology 15(5):1356-1363.

McCulley, R. L., I. C. Burke, and W. K. Lauenroth. 2009. Conservation of nitrogen increases with precipitation across a major grassland gradient in the central Great Plains of North America. Oecologia 159(3):571-581.

McHale, M. R., I. C. Burke, M. A. Lefsky, P. J. Peper, and E. G. McPherson. 2009. Urban forest biomass estimates: is it important to use allometric relationship developed specifically for urban trees? Urban Ecosystems 12:95-113.

Harmon, M. E., W. L. Silver, B. Fasth, H. Chen, I. C. Burke, W. J. Parton, S. C. Hart, W. S. Currie, and LIDET. 2009. Long-term patterns of mass loss during the decomposition of leaf and fine root litter: an intersite comparison. Global Change Biology 15(5):1320-1338.

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Steven Buskirk

Donadio, E., A. J. Novaro, S. W. Buskirk, A. Wurstten, M. S. Vitali and M. J. Monteverde. 2010. Evaluating a potentially strong trophic interaction: pumas and wild camelids in protected areas of Argentina. Journal of Zoology (London) 280:33-40.

Grenier, M. B., S. W. Buskirk, and R. Anderson-Sprecher.  2009. Estimating abundance of the black-footed ferret: comparing correlated density estimates to population indices. Journal of Wildlife Management 73:669-676.

Pauli, J. N., M. Ben-David, S. W. Buskirk,  J. E. DePue, and W. P. Smith.  2009.  An isotopic technique to mark mid-size vertebrates non-invasively. Journal of Zoology (London) 278:141-148.

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Matt Carling

Carling, MD and B Zuckerberg. 2011. Spatio-temporal changes in the genetic structure of the Passerina bunting hybrid zone. Molecular Ecology 20: 1166-1175

Florez, A*, MD Carling, and CD Cadena. 2011. Reconstructing the phylogeny of "Buarremon" brush-finches and near relatives (Aves: Emberizidae) from individual gene trees. Molecular Phylogenetics and Evolution 58: 297-303 .

Carling, MD, LG Serene*, and IJ Lovette. 2011. Using historical DNA to characterize hybridization between Baltimore ( Icterus galbula) and Bullock's ( Icterus bullockii) orioles. Auk 128: 61-68 .

Brumfield, RT and MD Carling. 2010. The influence of hybrid zones on species tree inference in manakins. In Estimating species trees: Practical and theoretical aspects (LL Knowles and S Kubatko, eds.). Wiley-Blackwell, Hoboken, NJ.

Carling, MD, IJ Lovette, and RT Brumfield. 2010. Historical divergence and gene flow: coalescent analyses of mitochondrial, autosomal and sex-linked loci in Passerina buntings. Evolution 64: 1762-1772 .

Carling, MD and RT Brumfield. 2009. Speciation in Passerina buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation. Molecular Ecology 18: 834-847 .

     * undergraduate

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Anna Chalfoun

Chalfoun, A. D., and T. E. Martin 2010.  Parental investment decisions in response to ambient nest predation risk versus actual predation on the prior nest.  Condor 112:701-710.

Chalfoun, A. D., and T. E. Martin.  2010.  Facultative nest patch shifts in response to nest predation risk in the Brewer's sparrow: A win-stay, lose-switch strategy? Oecologia 163:885-892.  

Chalfoun, A. D., and T. E. Martin.  2009. Habitat structure mediates predation risk for sedentary prey: Experimental tests of alternative hypotheses.   J. of Animal Ecology 78:497-503.

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Michael Dillon

Dillon, M. E., Wang, G., and R. B. Huey. 2010. Global metabolic impacts of recent climate warming. Nature 467:704-706. 

Dillon, M. E., Wang, G., Garrity, P. A., and R. B. Huey. 2009. Thermal preference in Drosophila. Journal of Thermal Biology 34(3):109-119. 

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Holly Ernest

Ernest HB, T. Winston Vickers, Scott A. Morrison, Michael R. Buchalski, Walter M. Boyce. 2014.  Fractured genetic connectivity threatens a southern California puma (Puma concolor) population.  In press, PlosOne.

Seth P. D. Riley, John P. Pollinger, Laurel K. Serieys, Jeffrey A. Sikich, Lisa Dalbeck, Robert K. Wayne, and Holly B. Ernest. 2014. Individual behavior dominates the dynamics of a mountain lion population in a highly fragmented urban landscape . Current Biology.

S. Crosbie, L. Souza, H. Ernest. 2014. Abundance and distribution of the Yellow-billed Magpie . Western Birds, The Quarterly Journal of Western Field Ornithologists.

J. Hull, A Engilis, J. Medley, E. Jepsen, J. Duncan, H. Ernest, J. Keane. A new subspecies of Great Gray Owl (Strix nebulosa) in the Sierra Nevada of California, USA . In press.
Journal of Raptor Research

LA Godoy, LA Tell, HB Ernest. 2013. Hummingbird Health: Pathogens and disease conditions in the family Trochilidae.  Journal of Ornithology.

LA Godoy, LS Dalbeck, LA Tell, LW Woods, RR Colwell, B Robinson, SM Wethington, A Moresco, PR Woolcock, HB ErnestCharacterization of avian poxvirus in Anna’s Hummingbird (Calypte anna) in California. In press. Journal of Wildlife Diseases.

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Jacob Goheen

Goheen, J.R. and T.M. Palmer. Defensive plant-ants stabilize megaherbivore-driven landscape change in an African savanna. Current Biology 20:1768-1772 . Authors contributed equally to this piece. 

Goheen, J.R., T.M. Palmer, F. Keesing, C. Riginos, and T.P. Young. Large herbivores facilitate savanna tree establishment through diverse and indirect pathways. Journal of Animal Ecology 79:372-382.

Palmer, T.M., D.F. Doak, M.L. Stanton, J.L. Bronstein, E.T. Kiers, T.P. Young, J.R. Goheen, and R.M. Pringle. Synergy of multiple partners, including freeloaders, increases host fitness in a multispecies mutualism. 2010. Proceedings of the National Academy of Sciences 107:17234-17239

Thibault, K.M., S.K.M. Ernest, E.P. White, J.H. Brown, and J.R. Goheen. Long-term insights into consumer-resource dynamics in desert rodents: effects of community composition across guilds. Journal of Mammalogy 91:787-797.

Drever, M.C., J.R. Goheen, and K. Martin. Species-energy theory, pulsed resources, and the regulation of species richness: avian community dynamics during a mountain pine beetle outbreak. Ecology 90:1095-1105. 

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Alex Guenther

Hoyle, C.R., M. Boy, N.M. Donahue, J.L. Fry, M. Glasius, A. Guenther, A.G. Hallar, K. Huff Hartz, M.D. Petters, T. Petaja, T. Rosenoern, and A.P. Sullivan, A review of the anthropogenic influence on biogenic secondary organic aerosol, Atmos. Chem. Phys. J1  - ACP, 11 (1), 321-343, 2011.

Boy, M., A. Sogachev, J. Lauros, L. Zhou, A. Guenther, and S. Smolander, SOSA - a new model to simulate the concentrations of organic vapours and sulphuric acid inside the ABL - Part 1: Model description and initial evaluation, Atmos. Chem. Phys. J1  - ACP, 11 (1), 43-51, 2011.

Wu, Z., X. Wang, F. Chen, A. Turnipseed, A. Guenther, D. Niyogi, U. Charusombat, B. Xia, J. Munger, K. Alapaty, Evaluating the calculated dry deposition velocities of reactive nitrogen oxides and ozone from two community models over a temperate deciduous forest, Atmospheric Environment, DOI: 10.1016/j.atmosenv.2011.02.063, 2011.

Wang X., Situ S., A. Guenther, F. Chen, Z. Wu and B. Xia, Study of spatiotemporal variability of biogenic terpenoid emissions with high-resolution land-cover and meteorological data, Tellus B, 2011

Patton, E., T. Horst, P. Sullivan, D. Lenschow, S. Oncley, W. Brown, S. Burns, A. Guenther, A. Held, T. Karl, S. Mayor, L. Rizzo, S. Spuler, J. Sun, A. Turnipseed, E. Allwine, S. Edburg, B. Lamb, R. Avissar, R. Calhoun, J. Kleissl, W. Massman, K. T. Paw U, J. Weil, The Canopy Horizontal Array Turbulence Study (CHATS), Bulletin of the American Meteorological Society, 2011

Guenther, A., Role des composes organiques volatils dans les interactions biosphere-atmosphere, Biofutur, 315: 42-45, 2010.

Karl, T., P. Harley, L. Emmons, B. Thornton, A. Guenther, C. Basu, A. Turnipseed, and K. Jardine, Efficient Atmospheric Cleansing of Oxidized Organic Trace Gases by Vegetation 10.1126/science.1192534 Science 330 (6005 ), 816-819 2010

Jardine, K., Abrell, L., Kurc, S. A., Huxman, T., Ortega, J., and Guenther, A.: Volatile organic compound emissions from Larrea tridentata (creosotebush), Atmos. Chem. Phys., 10, 12191-12206, doi:10.5194/acp-10-12191-2010, 2010.

Martin, S. T., Andreae, M. O., Althausen, D., Artaxo, P., Baars, H., Borrmann, S., Chen, Q., Farmer, D. K., Guenther, A., Gunthe, S. S., Jimenez, J. L., Karl, T., Longo, K., Manzi, A., Müller, T., Pauliquevis, T., Petters, M. D., Prenni, A. J., Pöschl, U., Rizzo, L. V., Schneider, J., Smith, J. N., Swietlicki, E., Tota, J., Wang, J., Wiedensohler, A., and Zorn, S. R.: An overview of the Amazonian Aerosol Characterization Experiment 2008 (AMAZE-08), Atmos. Chem. Phys., 10, 11415-11438, doi:10.5194/acp-10-11415-2010, 2010.

Situ S., X. Wang, A. Guenther, and F. Chen, Impacts of errors in meteorological simulations on estimation of isoprene emission, Acta Scientiae Circumstantiae, 30, 12, 2383-2391, 2010.

Charusombat, U., D. Niyogi, A. Kumar, X. Wang, F. Chen, A. Guenther, A. Turnipseed, K. Alapaty, Evaluating a new Deposition Velocity Module in the Noah Land Surface Model, Boundary-Layer Meteorology, 137, 271-290, doi: 10.1007/s10546-010-9531-y, 2010.

Misztal, P. K., Owen, S. M., Guenther, A. B., Rasmussen, R., Geron, C., Harley, P., Phillips, G. J., Ryan, A., Edwards, D. P., Hewitt, C. N., Nemitz, E., Siong, J., Heal, M. R., and Cape, J. N.: Large estragole fluxes from oil palms in Borneo, Atmos. Chem. Phys., 10, 4343-4358, doi:10.5194/acp-10-4343-2010, 2010.

Naik, V., Fiore, A. M., Horowitz, L. W., Singh, H. B., Wiedinmyer, C., Guenther, A., de Gouw, J. A., Millet, D. B., Goldan, P. D., Kuster, W. C., and Goldstein, A.: Observational constraints on the global atmospheric budget of ethanol, Atmos. Chem. Phys., 10, 5361-5370, doi:10.5194/acp-10-5361-2010, 2010.

Millet. D., A. Guenther, D. A. Siegel, N. B. Nelson, H. B. Singh, J. A. de Gouw, C. Warneke, J. Williams, G. Eerdekens, V. Sinha, T. Karl, F. Flocke, E. Apel, D. D. Riemer, P. I. Palmer, and M. Barkley. Global atmospheric budget of acetaldehyde: 3D model analysis and constraints from in-situ and satellite observations, Atmos. Chem. Phys., 10, 3405-3425, doi:10.5194/acp-10-3405-2010, 2010.

Warneke, C. J. de Gouw, L. Del Negro, J. Brioude, S. McKeen, H. Stark, W. Kuster, P. Goldan, M. Trainer, F. Fehsenfeld, C. Wiedinmyer, A. Guenther, A. Hansel, A. Wisthaler, E. Atlas, J. Holloway, T. Ryerson, J. Peischl, L. G. Huey, A. Hanks. Biogenic emission measurement and inventories determination of biogenic emissions in the eastern United States and Texas and comparison with biogenic emission inventories, J. Geophys. Research, 115, D00F18, doi:10.1029/2009JD012445, 2010.

Martin, S., M. Andreae, P. Artaxo, D. Baumgardner, Q. Chen, A. Goldstein, A. Guenther, C. Heald, O. Mayol‐Bracero, P. McMurry, T. Pauliquevis, U. Pöschl, K. Prather, G. Roberts, S. Saleska, M. Silva Dias, D. Spracklen, E. Swietlicki, and I. Trebs. Sources and Properties of Amazonian Aerosol, Reviews of Geophysics, 48, RG2002, doi:10.1029/2008RG000280, 2010.

Kim, S., T. Karl, A. Guenther, G. Tyndall, J. Orlando, P. Harley, R. Rasmussen, and E. Apel, Emissions and ambient distributions of Biogenic Volatile Organic Compounds (BVOC) in a Ponderosa pine ecosystem: interpretation of PTR-MS mass spectra, Atmos. Chem. Phys., 10, 1-14, 2010.

Leung, D. Y. C., P. Wong, B. K. H. Cheung, and A. Guenther, Improved land cover and emission factors for modeling biogenic volatile organic compounds emissions from Hong Kong, Atmospheric Environment, 44, 1456-1468, 2010.

Hewitt, C. N., Lee, J. D., MacKenzie, A. R., Barkley, M. P., Carslaw, N., Carver, G. D., Chappell, N. A., Coe, H., Collier, C., Commane, R., Davies, F., Davison, B., DiCarlo, P., Di Marco, C. F., Dorsey, J. R., Edwards, P. M., Evans, M. J., Fowler, D., Furneaux, K. L., Gallagher, M., Guenther, A., Heard, D. E., Helfter, C., Hopkins, J., Ingham, T., Irwin, M., Jones, C., Karunaharan, A., Langford, B., Lewis, A. C., Lim, S. F., MacDonald, S. M., Mahajan, A. S., Malpass, S., McFiggans, G., Mills, G., Misztal, P., Moller, S., Monks, P. S., Nemitz, E., Nicolas-Perea, V., Oetjen, H., Oram, D. E., Palmer, P. I., Phillips, G. J., Pike, R., Plane, J. M. C., Pugh, T., Pyle, J. A., Reeves, C. E., Robinson, N. H., Stewart, D., Stone, D., Whalley, L. K., and Yin, X.: Overview: oxidant and particle photochemical processes above a south-east Asian tropical rainforest (the OP3 project): introduction, rationale, location characteristics and tools, Atmos. Chem. Phys., 10, 169-199, 2010.

Emmons, L. K., Walters, S., Hess, P. G., Lamarque, J.-F., Pfister, G. G., Fillmore, D., Granier, C., Guenther, A., Kinnison, D., Laepple, T., Orlando, J., Tie, X., Tyndall, G., Wiedinmyer, C., Baughcum, S. L., and Kloster, S.: Description and evaluation of the Model for Ozone and Related chemical Tracers, version 4 (MOZART-4), Geosci. Model Dev., 3, 43-67, 2010.

Rizzo, L., P. Artaxo, T. Karl, A. B. Guenther, and J. Greenberg, Aerosol properties, in-canopy gradients, turbulent fluxes and VOC concentrations at a pristine forest site in Amazonia, Atmospheric Environment, 44, 503-511, 2010.

Situ S., X. Wang, and A. Guenther, Typical summer isoprene emission from vegetation in the Pearl River Delta region, Acta Scientiae Circumstantiae, 29 (4), 822-829, 2009.

Chen, J., J. Avise, A. Guenther, C. Wiedinmyer, E. Salathe, R. Jackson and B. Lamb, Future land use and land cover influences on regional biogenic emissions and air quality in the United States, Atmospheric Environment, 43, 5771-5780, 2009.

Weaver C., X.-Z. Liang, J. Zhu, P. J. Adams, P. Amar, J. Avise, M. Caughey, J. Chen, R. C. Cohen, E. Cooter, J. P. Dawson, R. Gill iam, A. Gill iland, A. H. Goldstein, A. Grambsch, D. Grano, A. Guenther, W. I. Gustafson, R. A. Harley, S. He, B. Hemming, C. Hogrefe, H.-C. Huang, S. W. Hunt, D. J. Jacob, P. L. Kinney, K. Kunkel, J.-F. Lamarque, B. Lamb, N. K. Larkin, L. R. Leung, K.-J. Liao, J.-T. Lin, B. H. Lynn, K. Manomaiphiboon, C. Mass, D. McKenzi e, L. J. Mickl ey, S. M. O'Neill , C. Nolte, S. N. Pandis, P. N. Racherla, C. Rosenzweig, A. G. Russell , E. Salathé, A. L. Steiner, E. Tagaris, Z. Tao, S. Tonse, C. Wiedinmyer, A. Williams, D. A. Winner, J.-H. Woo, S. Wu, and D. J. Wuebbles, A Preliminary Synthesis of Modeled Climate Change Impacts on U.S. Regional Ozone Concentrations, BAMS, DOI:10.1175/2009BAMS2568.1, 2009.

Barney, J., J. Sparks, J. Greenberg, T. Whitlow, and A. Guenther, Biogenic volatile organic compounds from an invasive species: impacts on plant-plant interactions, Plant Ecol., 203, 195-205, 2009.

Chen, Q., D. K. Farmer, J. Schneider, S. R. Zorn, C. L. Heald, T. G. Karl, A. Guenther, J. D. Allan, N. Robinson, H. Coe, J. R. Kimmel, T. Pauliquevis, S. Borrmann, U. Poschl, M. O. Andreae, P. Artaxo, J. L. Jimenez, and S. T. Martin, Mass Spectral Characterization of Submicron Biogenic Organic Particles in the Amazon Basin, Geophysical Research Letters, 36, L20806, doi:10.1029/2009GL039880, 2009.

Heald, C., M. Wilkinson, R. Monson, C. Alo, G. Wang and A. Guenther, Response of isoprene emission to ambient CO2 changes and implications for global budgets Global Change Biology, 15, 1127-1140, 2009.

Karl, M., A. Guenther, R. Köble, and G. Seufert, A new European plant-specific emission inventory of biogenic volatile organic compounds for use in atmospheric transport models, Biogeosciences, 6, 1059-1087, 2009.

Karl, T., Guenther, A., Turnipseed, A., Tyndall, G., Artaxo, P., and Martin, S.: Rapid formation of isoprene photo-oxidation products observed in Amazonia, Atmos. Chem. Phys., 9, 7753-7767, 2009.

Monks  P., C. Granier, S. Fuzzi, A. Stohl, M.L. Williams, H. Akimoto, M. Amann, A. Baklanov, U. Baltensperger, I. Bey, N. Blake, R.S. Blake, K. Carslaw, O.R. Cooper, F. Dentener, D. Fowler, E. Fragkou, G.J. Frost, S. Generoso, P. Ginoux, V. Grewe, A. Guenther et al, Atmospheric Composition Change - Global and Regional Air Quality, Atmospheric Environment, 43, 5268-5350, doi:10.1016/j.atmosenv.2009.08.021, 2009.

Papiez, M., M. Potosnak, W. Goliff, A. Guenther, S. Matsunaga, and W. Stockwell, The Impacts of Reactive Terpene Emissions from Plants on Air Quality in Las Vegas, Nevada, Atmos. Environ., 43, 4109-4123, 2009.

Ran, L., CS Zhao, FH Geng, X Tie, X Tang, L Peng, GQ Zhou, Q Yu, JM Xu, and A Guenther, Ozone photochemical production in urban Shanghai, China: Analysis based on ground level observations, J. Geophys. Res., 114, D15301, doi:10.1029/2008JD010752, 2009.

Stavrakou, T. J.-F. Müller, I. De Smedt, M. Van Roozendael, G. R. van der Werf, L. Giglio, and A. Guenther, Global emissions of non-methane hydrocarbons deduced from SCIAMACHY formaldehyde columns through 2003-2006, Atmos. Chem. Phys., 9, 3663-3679, 2009.

Turnipseed, A., S. Burns, D. Moore, J. Hu, A. Guenther, R. Monson, Controls over ozone deposition to a high elevation subalpine forest, Agricultural and Forest Meteorology, Volume 149, Issue 9, Pages 1447-1459, 2009.

Tsui, J., A. Guenther, W. Yip, F. Chen, A biogenic volatile organic compound emission inventory for Hong Kong, Atmospheric Environment, 43, 6442-6448, 2009.

Barkley, M. P., P. I. Palmer, I. De Smedt, T. Karl, A. Guenther, and M. Van Roozendael, Regulated large-scale annual shutdown of Amazonian isoprene emissions?, Geophys. Res. Lett., 36, L04803, doi:10.1029/2008GL036843, 2009.

Turnipseed, A., S. Pressley, T. Karl, B. Lamb, E. Nemitz, A. Guenther, G. Allwine, W. Cooper, S. Shertz, The use of disjunct eddy sampling methods for the determination of ecosystem level fluxes of trace gases, Atmos. Chem. Phys., 9, 981-994, 2009.

Avise, J., Chen, J., Lamb, B., Wiedinmyer, C., Guenther, A., Salathé, E., and Mass, C.: Attribution of projected changes in summertime US ozone and PM 2.5 concentrations to global changes, Atmos. Chem. Phys., 9, 1111-1124, 2009.

Kim S., T. Karl, D. Helmig, R. Daly, R. Rasmussen, and A. Guenther, Measurement of atmospheric sesquiterpenes by proton transfer reaction-mass spectrometry (PTR-MS), Atmos. Meas. Tech., 2, 99-112, 2009.

Chen, J., J. Avise, B. Lamb, E. Salathe, C. Mass, A. Guenther, C. Wiedinmyer, J.-F. Lamarque, S. O'Neill, D. McKenzie, and N. Larkin, The effects of global changes upon regional ozone pollution in the United States, Atmos. Chem. Phys., 9, 1125-1141, 2009.

Greenberg, J.P., A.B. Guenther, A. Turnipseed, Tethered balloon-based soundings of ozone, aerosols, and solar radiation near Mexico City during MIRAGE-MEX, Atmospheric Environment, 43, 2672-2677, 2009.

Stavrakou, T., J.-F. Muller, I. De Smedt, M. van Roozendael, . van der Werf, L. Giglio, and A. Guenther, Evaluating the performance of pyrogenic and biogenic emission inventories against one decade of space-based formaldehyde columns, Atmos. Chem. Phys., 9, 1037-1060, 2009.

Wang, X., F. Chen, C. Wiedinmyer, A. Guenther, M. Tewari and Z. Chai, Impacts of weather conditions modified by urban expansion on surface ozone: Comparison between the Pearl River Delta and Yangtze River Delta regions, Advances in Atmospheric Sciences, 26, 962-972, 2009.

Matsunaga, S., A. Guenther, J. Greenberg, M. Potosnak, M. Papiez, T. Hiura, S. Kato, S. Nishida, P. Harley and Y. Kajii Leaf level emission measurement of sesquiterpenes and oxygenated sesquiterpenes from desert shrubs and temperate forest trees using a liquid extraction technique, Geochemical Journal, Vol. 43, pp. 179 to 189, 2009.


Robert Hall

Helton, A. M., G. C. Poole, J. L. Meyer, W. M. Wollheim, B. J. Peterson, P. J. Mulholland, E. S. Bernhardt, J. A. Stanford, C. Arango, L. R. Ashkenas, L. W. Cooper, W. K. Dodds, S. V. Gregory, R. O. Hall, S. K. Hamilton, S. L. Johnson, W. H. McDowell, J. D. Potter, J. L. Tank, S. M. Thomas, H. M. Valett, J. R. Webster, and L. Zeglin. 2011. Thinking outside the channel: nitrogen cycling in networked river ecosystems.  Frontiers in Ecology and the Environment 9:229-238, doi: 10.1890/080211.

Beaulieu, J. J., J. L. Tank, S. K. Hamilton, W. M. Wollheim, R. O. Hall, P. J. Mulholland, B. J. Peterson, L. R. Ashkenas, L. W. Cooper, C. N. Dahm, W. K. Dodds, N. B. Grimm, S. L. Johnson, W. H. McDowell, G. C. Poole, H. M. Valett, C. P. Arango, M. J. Bernot, A. J. Burgin, C. Crenshaw, A. M. Helton, L. Johnson, J. M. O'Brien, J. D. Potter, R. W. Sheibley, D. J. Sobota, and S. M. Thomas. 2011. Nitrous oxide emission from denitrification in stream and river networks.   Proceedings of the National Academy of Sciences 108: 214-219.

Tronstad, L. M., R O. Hall, T. M. Koel and K. Gerow. 2010. Introduced lake trout produced a four-level trophic cascade in Yellowstone Lake. Transactions of the American Fisheries Society 139: 1536-1550.

Hotchkiss, E. R., and R. O. Hall. 2010. Linking calcification by exotic snails to stream inorganic carbon cycling.  Oecologia 163:235-244, DOI 10.1007/s00442-009-1536-1 .

Cross, W. F., E. J. Rosi-Marshall, K. Behn, R. O. Hall, A. E. Fuller, and C. V. Baxter.  2010. Invasion and production of New Zealand mud snails in the Colorado River, Glen Canyon.  Biological Invasions 12: 3033-3043.

Bernot, M. J., D. J. Sobota, R. O. Hall, P. J. Mulholland, W. K. Dodds, J. R. Webster, J. L. Tank, L. R. Ashkenas, L. W. Cooper, C. N. Dahm, S. V. Gregory, N. B. Grimm, S. K. Hamilton, S. L. Johnson, W. H. McDowell, J. L. Meyer, B. Peterson, G. C. Poole, H. M. Valett, J. R. Webster, C. Arango, J. J. Beaulieu, A. J. Burgin, C. L. Crenshaw, A. M. Helton, L. Johnson, J. Merriam, B. R. Niederlehner, J. M. O'Brien, J. D. Potter, R. W. Scheibley, and K. Wilson. 2010. Inter-regional comparison of land-use effects on stream metabolism.  Freshwater Biology 55: 1874-1890.

Tibbets, T. M., A. C. Krist, R. O. Hall, and L. A. Riley. 2010. Phosphorus-mediated changes in life-history traits of the invasive New Zealand mudsnail ( Potamopyrgus antipodarum). Oecologia 163: 549-559.

Hall, R. O., M. A. Baker, C. D. Arp, and B. J. Koch.  2009.  Hydrologic control of nitrogen uptake, storage, and export in a mountain stream. Limnology and Oceanography 54: 2128-2142.

Arango, C. P., L. A. Riley, J. L. Tank, and R. O. Hall.  2009. Herbivory by an invasive snail increases nitrogen fixation in a nitrogen limited stream.  Canadian Journal of Fisheries and Aquatic Sciences  66: 1309-1317.

Hall, R. O., J. L. Tank, D. J. Sobota, P. J. Mulholland, J. M. O'Brien, W. K. Dodds, J. R. Webster, H. M. Valett,  G. C. Poole, B. J. Peterson, J. L. Meyer, W. H. McDowell, S. L. Johnson, S. K. Hamilton, N. B. Grimm, S. V. Gregory, C. N. Dahm, L. W. Cooper, L.R. Ashkenas, S. M. Thomas, R. W. Sheibley, J. D. Potter, B. R. Niederlehner, L. Johnson, A. M. Helton, C. Crenshaw, A. J. Burgin, M. J. Bernot, J. J. Beaulieu, C. Arango.  2009.  Nitrate removal in stream ecosystems measured by 15N addition experiments: Total uptake.  Limnology and Oceanography 54: 653-665.

Mulholland, P. J., R. O. Hall, D. J. Sobota, W. K. Dodds, S. E. G. Findlay, N. B. Grimm, S. K. Hamilton, W. H. McDowell, J. M. O'Brien, J. L. Tank, L. R. Ashkenas, L. W. Cooper, C. N. Dahm, S. V. Gregory, S. L. Johnson, J. L. Meyer, B. J. Peterson, G. C. Poole, H. M. Valett, J. R. Webster, C. P. Arango, J. J. Beaulieu, M. J. Bernot, A. J. Burgin, C. L. Crenshaw, A. M. Helton, L. T. Johnson, B. R. Niederlehner, J. D. Potter, R. W. Scheibley, and S. M. Thomas.  2009. Nitrate removal in stream ecosystems measured by 15N addition experiments: Denitrification.   Limnology and Oceanography 54: 666-680.

Solomon, C., E. R. Hotchkiss, J. Moslemi, A. J. Ulseth, E. Stanley, R. O. Hall, and A. S. Flecker.  2009.  Sediment size and nutrients regulate denitrification in a tropical stream. Journal of the North American Benthological Society 28: 480-490.

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Stephen T. Jackson

Anderson-Carpenter, L.L., J.S. McLachlan, S.T. Jackson, M. Kuch, C. Lumibao & H.N. Poinar.  2011.  Ancient DNA from lake sediment materials: bridging the gap between paleoecology and genetics.   BMC Evolutionary Biology 2011 11:30.  ( doi:10.1186/1471-2148-11-30) .

Dawson, T.P., S.T. Jackson, J. House, I.C. Prentice & G.M. Mace.  2011.  Beyond predictions: biodiversity conservation under climate change.  Science 332:53-58.

Booth, R.K., S.T. Jackson & M. Notaro.  2010.  Using peatland archives to test paleoclimate hypotheses.  PAGES News 18(1):6-8.

Djamali, M., H. Akhani, V. Andrieu-Ponel, P. Bracconnot, S. Brewer, J.-L. de Beaulieu, D.  Fleitmann, J. Fleury, F. Gasse, F. Guibal, S.T. Jackson, A.-M. Lézine, M. Médail, P. Ponel, N. Roberts & L. Stevens.  2010.  Indian Summer Monsoon variations could have affected the early Holocene woodland expansion in the Near East. The Holocene 20:813-820.

Jackson, S.T. & D. Charman, editors. 2010.  Special issue on "Peatlands: Paleoenvironments and  Carbon Dynamics".  PAGES News, Volume 18, Number 1 (April 2010).

Jackson, S.T. & D. Charman.  2010.  Editorial: Peatlands - paleoenvironments and carbon dynamics.  PAGES News 18(1):3-4.

Jackson, S.T. & D. Sax.  2010.  Balancing biodiversity in a changing environment: extinction debt, immigration credit, and species turnover.  Trends in Ecology and Evolution 25:153-160.

Jackson, S.T. & D. Sax.  2010.  Response to "Biodiversity surpluses and deficits are not novel issues": We agree.  Trends in Ecology and Evolution 25:621-622.

Kaye, M.W., C.A. Woodhouse & S.T. Jackson.  2010.  Persistence and expansion of Ponderosa pine woodlands in the west-central Great Plains during the past two centuries.  Journal of Biogeography 37:1668-1683.

Liu, Y., S.T. Jackson, S. Brewer & J.W. Williams.  2010.  Assessing antiquity and turnover of terrestrial ecosystems in eastern North America using fossil pollen data: A preliminary study .   IOP Conference Series: Earth and Environmental Science 9 012005.  doi:10.1088/1755-1315/9/1/012005 .

Nichols, J., R.K. Booth, S.T. Jackson, E.G. Pendall & Y. Huang.  2010. Differential hydrogen isotopic ratios of Sphagnum and vascular plant biomarkers in ombrotrophic peatlands as a quantitative proxy for precipitation-evaporation balance.  Geochimica et Cosmochimica Acta 74:1407-1416.

Gill, J.L., J.W. Williams, S.T. Jackson, K.B. Lininger & G.S. Robinson.  2009.  Pleistocene megafaunal collapse, novel plant communities, and enhanced fire regimes in North America.  Science 326:1100-1103.

Humboldt, Alexander von & Aimé Bonpland.  2009.  Essay on the Geography of Plants (1807) (translated by S. Romanowski; edited by S.T. Jackson with accompanying essays and supplementary material by S.T. Jackson and S. Romanowski).  University of Chicago Press.  274 p.

Jackson, S.T.  2009.  Alexander von Humboldt and the general physics of the earth.  Science 324:596-597.

Jackson, S.T.  2009.  Introduction: Humboldt, ecology, and the cosmos.  Pages 1-52 in S.T. Jackson, editor.  Essay on the Geography of Plants (1807)  by Alexander von Humboldt, & Aimé Bonpland (translated by S. Romanowski). University of Chicago Press.

Jackson, S.T., J.L. Betancourt, R.K. Booth & S.T. Gray.  2009.  Ecology and the ratchet of events: climate variability, niche dimensions, and species distributions.  Proceedings of the National Academy of Sciences 106: 19685-19692.

Jackson, S.T., S.T. Gray & B.N. Shuman.  2009.  Paleoecology and resource management in a dynamic landscape: case studies from the Rocky Mountain headwaters region. Pages 61-80 in Conservation Paleobiology (G. Dietl & K.W. Flessa, editors).  Paleontological Society Papers Volume 15.

Jackson, S.T. & R.J. Hobbs.  2009.  Ecological restoration in the light of ecological history.  Science 325:567-569.

Bennington, J.B., B. DiMichele, C. Badgley, R. Bambach, P. Barrett, K. Behrensmeyer, R. Bobe, R. Burnham, T. Daeschler, J. van Dam, J. Eronen, D. Erwin, S. Finnegan, S. Holland, G. Hunt, D. Jablonski, S. Jackson, B. Jacobs, S. Kidwell, P. Koch, M. Kowalewski, C. Labandeira, C. Looy, K. Lyons, P. Novack-Gottshall, R. Potts, P. Roopnarine, C. Strömberg, H. Sues, P. Wagner, P. Wilf & S. Wing.  2009.  Paleontological powers of ten: issues of scale in paleoecology.  PALAIOS 24:1-4.

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William Lauenroth

Lauenroth, W. K. and J. B. Bradford. 2011. Ecohydrology of dry regions of the United States: Water balance consequences of small precipitation events. Ecohydrology DOI- 10.1002/eco.195

Sasaki, T. and W. K. Lauenroth. 2011. Dominant species, rather than diversity, regulates temporal stability of plant communities. Oecologia DOI 10.1007/s00442-011-1916-1

Byrne, K. M., W. K. Lauenroth, and L. N. Davis. 2010. Non-native plant species impacts on production and diversity in the front range of Colorado. Western North American Naturalist 70: 288-295.

Hwang, B. C., and W. K. Lauenroth. 2010. Effect of nitrogen, water, and neighbor presence on the growth of Hesperis matronalis in a natural community. American Midland Naturalist 163: 212-219.

Munson, S. M., T. J. Benton, W. K. Lauenroth, and  I. C. Burke. 2010. Soil carbon flux following pulse precipitation events in the shortgrass steppe. Ecological Research 25: 205-211. DOI: 10.1007/s11284-009-0651-0

Munson, S. M. and W. K. Lauenroth. 2009. Plant population and community responses to removal of the dominant species. Journal of Vegetation Science 20: 1-9.

McCulley, R. L., I. C. Burke, and W. K. Lauenroth. 2009. Conservation of nitrogen increases with precipitation across a major grassland gradient in the central Great Plains of North America. Oecologia 159: 571-581.

Derner, J. D., W. K. Lauenroth, P. Stapp, and D. J. Augustine. 2009. Livestock as ecosystem engineers for grassland bird habitat in the western Great Plains of North America. Rangeland Ecology and Management 62:111-118.

Lauenroth, W. K., R. L. Dougherty, and J. S. Singh. 2009. Precipitation event size controls on long-term abundance of Opuntia polyacantha in Great Plains grasslands. Great Plains Research 19: 55-64.

White, M. A., Kirsten M. de Beurs, Kamel Didan, David W. Inouye, Andrew D. Richardson, Olaf P. Jensen, John O'Keefe, Gong Zhang, Ramakrishna R. Nemani, Willem, J.D. van Leeuwen, Jesslyn F. Brown, Allard de Wit, Michael Schaepman, Xioamao Lin, Michael Dettinger, Amey S. Bailey, John Kimball, Mark D. Schwartz, Dennis D. Baldocchi, John T. Lee, William K. Lauenroth. 2009. Intercomparison, interpretation, and assessment of spring phenology in North America estimated from remote sensing for 1982 to 2006. Global Change Biology 15: 2335-2359. doi: 10.1111/j.1365-2486.2009.01910.x

Burke, I. C. and W. K. Lauenroth. 2009. Environmentalist label not in our best interest. Frontiers in Ecology and the Environment 7:240.

Lauenroth, W. K. and J. B. Bradford. 2009. Ecohydrology of dry regions of the United States: Precipitation pulses and intraseasonal drought. Ecohydrology 2 173-181.

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Jeffrey Lockwood

Lockwood, J. A. 2011. The ontology of biological groups: Do grasshoppers form assemblages, communities, guilds, populations or something else? Psyche, vol. 2011, Article ID 501983, 9 pages, 2011. doi:10.1155/2011/501983.

Lockwood, J. A. 2010. The fate of the Rocky Mountain locust, Melanoplus spretus Walsh: Implications for Conservation Biology. Terrestrial Arthropod Reviews 3: 129-160.

Monthei, D., S. Mueller, J. Lockwood and M. Debboun. 2010. Entomological terrorism: A tactic in asymmetrical warfare. Army Medical Department Journal 10: 11-21.

Lockwood, J. A. 2010. Gaia for guys. The Trumpeter (Journal of Ecosophy) 26: 3-10.

Briske, D. D., R. A. Washington-Allen, C. R. Johnson, J. A. Lockwood, D. R. Lockwood, T. K. Stringham, and H. H. Shugart. 2010. Catastrophic thresholds: A synthesis of concepts, perspectives, and applications. Ecology and Society 15 (3): 37. [online: ecologyandsociety.org/vol15/iss3/art37/]

Lockwood, J. A. 2010. God of small things: A review of EO Wilson's Anthill. in Conservation Magazine 11: 43-44.

Lockwood, J. A. 2010. Defiance: A Tale of Absurdity and Insanity, pp. xx-yy, in What's Nature Got to Do with Me?: Staying Wildly Sane in a Mad World, Yvette Schnoeker-Shorb and Terril Shorb (eds.), Native West Press.

Lockwood, J. A. 2010. Six-legged teachers: Lessons from locusts and beetles. WyoFile (an independent, non-profit news service focused on the people, places and policy of Wyoming) (Nov. 2, 2010).

Lockwood. J. A. 2010. Good works. UU World. Fall, 24(3): 422.

Lockwood, J. A. 2010. La Joie du Criquet, pp. 173-180, in  Wildbranch: An Anthology of Nature, Environmental, and Place-based Writing, F. Caplow and S. A. Cohen (eds.), University of Utah Press.

Lockwood, J.A. 2010. Good works, pp. 60-61, in Bless All Who Serve: Sources of Hope, Courage and Faith for Military Personnel and Their Families, M. Bernard (ed.), Skinner House, Boston.

Lockwood, J. A. 2010. How many species are there on earth? A final, definitive, and precise answer. Science Creatively Quarterly

Lockwood, J. A. 2009. Mother nature's dark side: Maybe we're not in such good hands (review of P. Ward's "The Medea Hypothesis: Is life on earth ultimately self-destructive?") Conservation Magazine 10 (July-September): 43-44.

Lockwood, J. A. 2009. Humor, humility and hope in the work of Brian Burkhardt, pp. 66-67. In Diet 09 (the Diet Gallery guide, Miami, Florida).

Lockwood, J. A. 2009. The Scary Caterpillar. New York Times Op-Ed page (WK 12), April 20, 2009.

Lockwood, J. A. 2009. Robert Pfadt: In memory and honor of a scholar and a gentleman. Metaleptea 29: 6-9.

Lockwood, J. A. 2009. Six-Legged Soldiers: An interview with the author (interview by Sue Vogan). Peer Observations (bi-monthly medical magazine), March-April, pp. 2-10.

Lockwood, J. A. 2009. Six-Legged Soldiers: The Rest of the Story. Oxford University Press blog 3-part series: blog.oup.com/2009/02/six‑legged‑soldiers‑part1/; blog.oup.com/2009/02/ sixlegged‑ part2/; blog.oup.com/2009/02/sixlegged‑part3/

Lockwood, J. A. 2009. "Could ecoterrorists let slip the bugs of war?  Insects can spread disease and destroy crops with devastating speed. Do not underestimate their potential as weapons," London Times, February 2 and online at timesonline.co.uk/tol/comment/columnists/guest_ contributors/article5634450.ece (and reprinted at the websites of The Drudge Report, Fox News, and Red Orbit).

Lockwood, J. A. 2009. Life Preservers. Quest (on-line magazine): February clf.uua.org/quest/2009/02/lockwood.html, with podcast at clf.uua.org/quest/2009/02/index.html)

Lockwood, J. A. 2009. Six-legged Soldiers: Page 99. Campaign for the American Reader website,  page99test.blogspot.com/2009/02/jeffrey‑lockwoods‑six‑legged‑soldiers.html

Lockwood, J. A. 2009. (Un)Natural Selection: A Toxic Tale of Flies and People. Ecotone  4: 399-411 (invited).

Reiners, W. A. and J. A. Lockwood. 2009. Philosophical Foundations for the Practices of Ecology, Cambridge University Press, New York.

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Carlos Martinez del Rio

Karasov, W. H., C. Martinez del Rio, and E. Caviedes-Vidal. 2011. Ecological physiology of diet and digestive systems. Annual Review of Physiology 73: 69-93

Wolf, N., G. J. Bowen, and C. Martínez del Rio. 2011. The influence of drinking water on the dD and d18O values of house sparrow plasma, blood, and feathers. J. Exp. Biol. 214: 98-103

Robinson, G. E. et al (20 others!!). 2010. Empowering Biology. Bioscience 60: 923-930

Martínez del Rio, C. and W.H. Karasov. 2010. Body Size and Temperature: Why They Matter. Nature Knowledge Project

Martínez del Rio, C. and A. D. Middleton. 2010. Laws for ecology? (book review). Ecology 91: 1244-1245.

Kelly, L. J. and . C. Martínez del Rio. 2010. The fate of carbon in growing fish: An experimental study of isotopic routing. Physiol. Biochem. Zool. 83: 473-480.

Carleton, S. A. and C. Martínez del Rio. 2010. Growth and catabolism in isotopic incorporation: a new formulation and experimental data. Functional Ecology 24: 805-812

Martínez del Rio, C., N. Wolf, S. Carleton, and . Z. Gannes. 2009. Isotopic ecology ten years after a call for more laboratory experiments. Biol. Rev. 84: 91-111

Martínez del Rio, C., P. Sabat, R. Anderson-Sprecher, and S. P. Gonzales. 2009. Dietary and isotopic specialization: The isotopic niche of three Cinclodes ovenbirds. Oecologia 161: 149-159

Carlo, T. A., J. Tewksbury, and C. Martínez del Rio. 2009. A new method to track seed dispersal and recruitment using 15N isotope enrichment. Ecology

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David McDonald

McDonald, D.B. 2010. Dispatch: Social networking for dullards. Curr. Biol. 20: R856-857.

McDonald, D.B. 2010. A spatial dance to the music of time in the leks of long-tailed manakins. Pp. 55-81 In Adv. Study of Behav. Vol. 42 (R. Macedo, ed.). Burlington: Academic Press. * ISBN: 978-0-12-380894-3

McDonald, D.B. 2009. Young-boy networks without kin clusters in a lek-mating manakin. Behav. Ecol. Sociobiol. 63: 1029-1034. (special issue on social networks). DOI 10.1007/s00265-009-0722-9

Hansen, H., D.B. McDonald, P. Groves, J.A.K. Maier, and M. Ben-David. 2009. Social networks and the formation and maintenance of river otter groups. Ethol. 115: 384-396. DOI 10.1111/j.1439-0310.2009.01624.x

Herreman, J.K., G.M. Blundell, D.B. McDonald, and M. Ben-David. 2009. Asymmetrical male-mediated gene flow between harbor seal ( Phoca vitulina) populations in Alaska. Can. J. Zool. 87: 498-507.

Quist, M.C., M.R. Bower, W.A. Hubert, T.L. Parchman, and D.B. McDonald. 2009. Morphometric and meristic differences of bluehead sucker, flannelmouth sucker, white sucker, and their hybrids: tools for the management of native species in the upper Colorado River basin. N. Am. J. Fish. Mgmt. 29: 460-467.

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Thomas Minckley

Minckley, T.A., R.K. Booth, S.T. Jackson. 2011 Response of regional pollen assemblages to late Holocene drought events in the upper Midwest, USA. The Holocene  in press

Minckley, T.A., R.K. Shriver *, and B. Shuman, 2011. Resilience and regime change in a southern Rocky Mountain ecosystem during the past 17000 years. Ecological Monographs

Minckley, T.A., and R.K. Shriver *, 2011. Vegetation responses to changing fire regimes in a Rocky Mountain forest. Journal of Fire Ecology 7 (2), 66-80. doi: 10.4996/fireecology.007002066

Minckley, T.A., A. Brunelle, and S. Blissett #, 2011. Holocene sedimentary and environmental history of an in-channel wetland along the ecotone of the Sonoran and Chihuahuan Desert grasslands. Quaternary International 235, 40-47

Haws, J.A., C.L. Funk, M.M Benedetti, N.F. Bicho, J.M. Daniels, T.A. Minckley, R.F. Denniston, M. Jeraj, J.F. Gibaja, B.S. Hockett, 2011. Paleolithic landscapes and seascapes of the west coast of Portugal. In N.F. Bicho, J.A. Haws, and L. Davis (eds.). Trekking the Shore: Changing Coastlines and the Antiquity of Coastal Settlement, Springer, New York., pp. 203-246.

Shinker, J.J., B.N. Shuman, and T.A. Minckley. 2010 . Climatic Shifts in the Availability of Contested Waters: A Long-term Perspective from the Headwaters of the North Platte River. Annals of the Association of American Geographers100, 866-879

Haws, J.A., M.M. Benedetti, C.L. Funk, N.F. Bicho, J.M. Daniels, P.A. Hesp, T.A. Minckley, S.L. Forman, M. Jeraj, J.F. Gibaja, B.S. Hockett. 2010 . Coastal wetlands and the Neanderthal settlement of Portuguese Estremadura. Geoarchaeology 25, 709-744

Shuman, B., P. Pribyl *, T.A. Minckley, J.J. Shinker. 2010 . Rapid hydrologic shifts and prolonged droughts in Rocky Mountain headwaters during the Holocene. Geophysical Research Letters 37, L06701, doi:10.1029/2009GL042196

Brunelle, A., T.A. Minckley, S. Blissett #, S.K. Cobabe #, B.L. Guzman *, 2010 . A ~8000 year fire history from an Arizona/Sonora borderland ciénega. Journal of Arid Environments 74, 475-481

Benedetti, M.M., J.A. Haws, C.L. Funk, J.M. Daniels, P. Hesp, N.F. Bicho, T.A. Minckley, and S.L. Foreman, 2009. Late Pleistocene raised beaches of coastal Estremadura, central Portugal. Quaternary Science Reviews 28, 3428-3447

Minckley, T.A., M.Clementz, A.R. Brunelle and G.A. Klopfenstein *, 2009. Isotopic analysis of wetland development in the American Southwest. The Holocene 19, 737-745

Marlon, J.R., P.J. Bartlein, M.K. Walsh, S.P. Harrison, K.J. Brown, M.E. Edwards, P.E. Higuera, M.J. Power, C. Whitlock, R.S. Anderson, C. Briles, A. Brunelle, C. Carcaillet, M. Daniels, F.S. Hu, M. Lavoie, C. Long, T. Minckley, P.J.H. Richard, D.S. Shafer, W. Tinner, C.E. Umbanhower Jr., 2009. Wildfire responses to abrupt climate change in North America. Proceedings of the National Academy of Science 106, 2519-2524

# graduate student coauthor, * undergraduate student co-author

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Melanie Murphy

Wagner H, Murphy M, Holderegger R, Waits L (2012) Developing an interdisciplinary, distributed graduate course for 21st century scientists BioScience. 62: 182-188. ISSN 0006-3568, doi:10.1525/bio.2012.62.2.10

Lemmon EM, Murphy M, Juenger TE (2011) Identification and characterization of nuclear microsatellite loci for multiple species of chorus frogs ( Pseudacris) for population genetic analyses.  Conservation Genetics Resources 3, 233-237

Lemmon EM, Murphy M, Juenger TE. 2011. Identification and characterization of nuclear microsatellite loci for multiple species of chorus frogs ( Pseudacris) for population genetic analyses.  Conservation Genetics Resources 3, 233-237

Murphy M, Evans J. 2011. Genetic connectivity as a function of landscape connectivity: application of landscape genetics for predictive modeling in Predictive Wildlife and Habitat Modeling in Landscape Ecology eds Drew, CA, Huettmann F, Wiersma Y. Springer Publishers

Evans J, Murphy M,  Cushman S, Holden Z. 2011. Modeling tree distribution and change using Random Forests.  in Predictive Wildlife and Habitat Modeling in Landscape Ecology eds Drew, CA, Huettmann F, Wiersma Y. Springer Publishers

Murphy M, Dezzani R, Pilliod D, Storfer A. 2010. Landscape genetics of high mountain frog metapopulations Molecular Ecology 19, 3634-3649.

Murphy M, Evans J, Storfer A. 2010. Quantify ecological process at multiple spatial scales using landscape genetics: Bufo boreas connectivity in Yellowstone National Park. Ecology 91, 252-261.

Funk WC, Murphy MA. 2010. Testing evolutionary hypotheses using landcape genetics. Molecular Ecology 19, 427-430.

Storfer A, Murphy MA, Holderegger R, Spear SF, Waits L. 2010.  Landscape genetics, where are we now?  Molecular Ecology 19, 3496-3514.

Landguth E, Cushman S, Murphy M, Luikart G. 2010. Relationships between migration rates and landscape resistance assessed using individual-based simulations. Molecular Ecology Resources 10, 854-862.

Epperson BK, McRae B, Scribner K, Cushman S, Rosenberg MS, Fortin M-J, James P, Murphy MA, Manel S, Legendre P, Dale M. 2010. Utility of computer simulations in landscape genetics Molecular Ecology 19, 3549-3564.

Landguth E, Cushman S, Schwartz MK, McKelvey K, Murphy MA, Luikart G. 2010. Quantifying the lag time to detect barriers in landscape genetics.  Molecular Ecology 19, 4179-4191.

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Elise Pendall

Pendall, E ., *Osanai, Y., Williams, A., and Hovenden, M.A. 2011. Soil C storage under simulated climate change is mediated by plant functional type. Global Change Biology 17: 505-514.

Luo, Y. Q., J. Melillo, et al. 2011. Coordinated Approaches to Quantify Long-Term Ecosystem dynamics in Response to Global Change. Global Change Biology 17: 843-854.

Cable, J.M., Ogle, K., Lucas, R., Charlet, D., Cleary, M.B., Griffith, A., Nowak, R.S., Rogers, M., Steltzer, H., Sullivan, P., Pendall, E., Smith, S., Huxman, T.E., Loik, M., Tissue, D.T., van Gestel, N., Welker, J. 2011. The unique responses of desert soil respiration to temperature: a seven desert synthesis. In press at Biogeochemistry. DOI 10.1007/s10533-010-9448-z

Pendall, E., *Schwendenmann, L., Tans, P.P., Rahn, T., Miller, J.B. 2010. Fluxes of CO 2, CH 4, CO, N 2O and H 2 and isotope source signatures estimated from nocturnal boundary layers in forest and pasture sites in Panama. Global Change Biology 16: 2721-2736.

*Carrillo, Y., Pendall, E., Dijkstra, F.A., Morgan, J.A., Newcomb, J. 2010. Carbon input control over soil organic matter dynamics is a temperate grassland exposed to elevated CO2 and warming. Biogeosciences Disc. 7: 1575-1602.

Wilske, B., Kwon, H., Wei, L., Xie, J., Lu, N., Chen, S., Lin, G., Guan, W., Pendall, E., Ewers, B.E., and Chen, J. 2010. Evapotranspiration and regulating mechanisms in two semiarid Artemisia-dominated shrub steppes at opposite sides of the globe, Journal of Arid Environments 74: 1461-1470.

Dangi, S.R., Stahl, P.D., Pendall, E., Cleary, M.B., and Buyer, J.S. 2010. Recovery of soil microbial community structure after fire in a sagebrush-grassland ecosystem. Land Degradation and Development 21: 423-432.

Dijkstra, F.A., Blumenthal, D., Morgan, J.A., Pendall, E., Carrillo, Y., Follett, R.F.  2010. Contrasting effects of elevated CO 2 and warming on nitrogen cycling in a semiarid grassland. New Phytologist 187: 426-437.

*Cleary, M.B., Pendall, E., Ewers, B.E. 2010. Aboveground and belowground carbon pools after fire in mountain big sagebrush steppe. Rangeland Ecology and Management 63: 187-196.

Nichols, J., Booth, R.K., Jackson, S.T., Pendall, E., and Huang, Y-S. 2010. Differential hydrogen isotopic ratios of Sphagnum and vascular plant biomarkers in ombrotrophic peatlands as a quantitative proxy for precipitation-evaporation balance. Geochimica et Cosmochimica Acta 74: 1407-1416.

*Bachman, S.A., Heisler-White, J., Pendall, E., Williams, D.G., and Morgan, J.A., 2010. Elevated carbon dioxide alters impacts of precipitation pulses on ecosystem  photosynthesis and respiration in a semi-arid grassland. Oecologia 162: 791-802. DOI 10.1007/s00442-009-1511-x.

Wingate, L., Ogee, J., Cuntz, M., Genty, B., Reiter, I., Seibt, U., Yakir, D., Peylin, P., Miller, J.B., Burlett, R., Maseyk, K., Mencuccini, M., Pendall, E., Shim, J., Barbour, M., Hunt, J., Mortazavi, B., Grace, J. 2009. The impact of soil micro-organisms on the global budget of δ 18O in atmospheric CO 2. Proceedings of the National Academy of Science 106: 22411-22415.

*Shim, J.H., Pendall, E., Ojima, D.S., and Morgan, J.A. 2009. Wetting and drying cycles drive variations in d 13C of respired CO 2 in semi-arid grassland. Oecologia,160, 321-333.

     * student

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Frank Rahel

Dauwalter, D.C. and F. J. Rahel.  2011. Patch size and shape influence the accuracy of mapping small habitat patches with a global positioning system. Environmental Monitoring and Assessment: In press.

D.C. Dauwalter, F. J. Rahel and K.G. Gerow.  2010.  Power of revisit monitoring designs to detect forest-wide declines in trout populations.  North American Journal of Fisheries Management 30:1462-1468.

Cook, N., F.J. Rahel and W.A. Hubert. 2010.  Persistence of Colorado River cutthroat trout populations in isolated headwater streams of Wyoming.  Transactions of the American Fisheries Society, 139:1500-1510.

Carlson, A. J. and F. J. Rahel.  2010. Annual intrabasin movement and mortality of adult Bonneville cutthroat trout among complementary riverine habitats.  Transactions of the American Fisheries Society 139:1360-1371.

Beatty, R.J., F.J. Rahel, and W.A. Hubert.  2009. Complex influences of low-head dams and artificial wetlands on fishes in a Colorado River tributary system.  Fisheries Management and Ecology 16:457-467.

O'Connor, R.R. and F.J. Rahel.  2009.  Investigating fish habit use from a habitat patch perspective: brown trout ( Salmo trutta) in a high plains stream in Wyoming, U.S.A.  Ecology of Freshwater Fish 18:473-480.

Dauwalter, D.C., F.J. Rahel and K. G. Gerow. 2009. Temporal variation in trout populations: implications for monitoring and trend detection.  Transactions of the American Fisheries Society. 138:38-51.

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William Reiners

Reiners, W.A. and S.D. Prager. 2010. Understanding systems on the cusp. Ecology 91(4): 1247-1248. (Book review)

Reiners, W.A. and J.A. Lockwood. 2009. Philosophical foundations for the practices of ecology. Cambridge University Press, Cambridge, UK.

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Bryan Shuman

Berland, A.*, B. Shuman, and S. Manson. 2011. Simulated Importance of Dispersal, Disturbance, and Landscape History in Long-term Ecosystem Change in the Big Woods, Minnesota. Ecosystems 14 (3): 398-414.

Newby, P.*, B. N. Shuman, J. P Donnelly, and D. MacDonald. 2011. Evidence of centennial-scale droughts during the Younger Dryas and Holocene near the Hudson River watershed, U.S.A. Quaternary Research 75: 523-530.

Williams, J. W., J. L. Blois, and B. Shuman. 2011. Extrinsic and intrinsic forcing of abrupt ecological change: case studies from the late Quaternary. Journal of Ecology 99 (3): 664-677.

Bartlein, P.J., S. Harrison, S. Brewer, S. Connor, B.A.S. Davis, K. Gajewski, J. Guiot, T. I. Harrison-Prentice, A. K. Henderson*, O. Peyron, I. C. Prentice, M. Scholze, H. Seppä, B. Shuman, S. Sugita, R. S. Thompson, A. E. View, J. Williams, and H. Wu. 2011. Pollen-based continental climate reconstructions at 6 and 21 ka: a global synthesis. Climate Dynamics. DOI 10.1007/s00382-010-0904-1.

Shuman, B., and C. Plank*. 2011. Orbital, Ice Sheet, and Solar Controls on Holocene moisture in the North Atlantic Drainage Basin. Geology 39: 151-154.

Henderson, A. K.*, D. M. Nelson, F. S. Hu, Y. Huang, B. N. Shuman, and J. W. Williams. 2010. Holocene precipitation seasonality captured by a dual hydrogen and oxygen isotope approach at Steel Lake, Minnesota. Earth and Planetary Science Letters 300 (3-4): 205-214.

Henderson, A. K.*,  and B. N. Shuman. 2010. Differing controls on river- and lake-water hydrogen and oxygen isotopic values in the western USA. Hydrological Processes 24 (26): 3894-3906.

Shuman, B., P. Pribyl†, T. A. Minckley, and J.J. Shinker. 2010. Rapid hydrologic shifts and prolonged droughts in Rocky Mountain headwaters during the Holocene. Geophysical Research Letters 37: L06701. doi:10.1029/2009GL042196.

Shinker, J. J., B. N. Shuman, T. Minckley, A. Henderson*. 2010. Climatic shifts in the availability of contested waters: a long-term perspective from the headwaters of the North Platte River. Annals of the Association of American Geographers 100 (4): 866-879.

Williams, J. W., B. Shuman, P. J. Bartlein, N. S. Diffenbaugh, T. Webb III. 2010. Rapid, Time-Transgressive and Variable Responses to Early Holocene Mid-Continental Drying in North America. Geology 38 (2): 135-138.

Plank, C.* and B. Shuman. 2009. The effects of lake area and volume changes on the surface energy budget of Minnesota's lake-dotted landscape. Journal of Climate 22, 4055-4065.

Shuman, B., A. Henderson*, C. Plank*, V. Stefanova, and S. Ziegler. 2009. Woodland-to-forest transition during prolonged drought in Minnesota after ca. AD 1300. Ecology 90, 2792-2807 .

Shuman, B., A. Henderson*, S. M. Colman, J. R. Stone, L. R. Stevens, S. C. Fritz, M. J. Power, and C. Whitlock. Holocene Lake-Level Trends in the Rocky Mountains, U.S.A. 2009. Quaternary Science Reviews 28, 1861-1879.

Shuman, B., J. P. Donnelly, P. Newby. Abrupt climate change as an important agent of ecological change in the Northeast U.S. over the past 15,000 years. 2009. Quaternary Science Reviews 28, 1693-1709.

Newby, P.*, J. P. Donnelly, and B. Shuman. 2009. Evidence of centennial-scale drought from southeastern Massachusetts during the Pleistocene/Holocene transition. Quaternary Science Reviews 28, 1675-1692.

Henderson, A.*, and B. Shuman. 2009. Hydrogen and oxygen isotopic composition of lake water in the western United States. Geological Society of America Bulletin 121 (7/8) 1179-1189.

Williams, J. W., B. Shuman, P. J. Bartlein, N. S. Diffenbaugh. 2009. Abrupt responses of the Midwestern prairie-forest ecotone to early Holocene aridity. Global and Planetary Change 66 (3-4), 195-207.

     *Graduate student author; †undergraduate author

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Peter Stahl

Fallgren. P., R. Zhang, P.D. Stahl. 2010. Empirical Models Estimating Carbon Dioxide Accumulation in Two Petroleum Hydrocarbon-Contaminated Soils. Bioremediation Journal 14:98-108.

Dangi, S.R., P.D. Stahl, M.B. Cleary, E. Pendall, and J.S. Buyer. 2010. Recovery of soil microbial community structure after fire in a sagebrush grassland ecosystem. Land Degradation and Development 21:423-432. DOI:10.1002ldr.975

Wick, A.F., P.D. Stahl, L.J. Ingram, L. Vicklund. 2009. Soil aggregation and organic carbon in short-term stockpiles. Soil Use and Management 25:311-319.

Chatterjee, A., L.J. Ingram, G.F. Vance and P.D. Stahl. 2009. Soil processes and microbial community structures in 45 and 135 year old Lodgepole Pine stands. Canadian Journal of Forest Research 39:2263-2271.

Wick, A.F., S. Huzurbazar, and P.D. Stahl. 2009. Use of Bayesian methods to model soil aggregation in undisturbed semiarid grasslands. Soil Science Society of America Journal 73: 1707-1714.

Wick, A.F., P.D. Stahl, L.J. Ingram. 2009. Aggregate associated carbon and nitrogen in reclaimed sandy loam soils.  Soil Science Society of America Journal 73:1852-1860.

Wick, A.F., L.J. Ingram and P.D. Stahl. 2009. Aggregate and organic matter dynamics in reclaimed soils as indicated by stable carbon isotopes.  Soil Biology and Biochemistry 41:201-209.

Ganjegunte, G., A.F. Wick, P.D. Stahl and G.F. Vance. 2009.  Accumulation and composition of total organic carbon in reclaimed mine lands in a western US coalfield.  Land Degradation and Development 20: 156-175.

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Annika Walters

Walters, A.W. 2011. Resistance of aquatic insects to a low flow disturbance: exploring a trait-based approach. Journal of the North American Benthological Society 30: 346-356.

Walters, A.W. and D.M. Post. 2011. How low can you go? Response of aquatic insect communities to low flow disturbance. Ecological Applications 21:163-174.

West, D., A.W. Walters, S. Gephart, D.M. Post. 2010. Nutrient loading by anadromous alewives: contemporary patterns and predictions for restoration efforts. Canadian Journal of Fisheries and Aquatic Sciences 67: 1211-1220.

Walters, A.W., R.T. Barnes, and D.M. Post. 2009 Anadromous alewife contribute marine-derived nutrients to coastal stream food webs. Canadian Journal of Fisheries and Aquatic Sciences 66:439-448.

Post D.M. and A.W. Walters. 2009. Nutrient excretion rates of anadromous alewives during their spawning migration. Transactions of the American Fisheries Society 138: 264-268

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Naomi Ward

Campbell MA, Chain PS, Dang H, El Sheikh AF, Norton JM, Ward NL, Ward BB, Klotz MG.  2011. Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis'. FEMS Microbiol Ecol. Apr;76(1):39-48. doi: 10.1111/j.1574-6941.2010.01027.x. Epub 2011 Jan 11.

Ward NL, and Klotz MG.  2011. Harnessing the power of microbial genomics for exploring exceptions and shifting perceptions. Frontiers in Microbiology 1:  DOI=10.3389/fmicb.2010.00146   

Ward, N.L. and J.T. Staley. 2010. Genus Planctomyces. In D. Brenner, N.R. Krieg, J.T. Staley, and G.M. Garrity (eds). Bergey's Manual of Systematic Bacteriology, Second Edition. Volume 4. pp. 559-573.  Springer, New York.

Ward, N.L. 2010. Phylum Planctomycetes. In D. Brenner, N.R. Krieg, J.T. Staley, and G.M. Garrity (eds). Bergey's Manual of Systematic Bacteriology, Second Edition. Volume 4. pp. 557-559. Springer, New York.

Kamneva, O.K., D.A. Liberles, and N.L. Ward. 2010. Genome-wide influence of indel substitutions on evolution of bacteria of the PVC super-phylum, revealed using a novel computational method. Genome Biology and Evolution  2:870-886.

Domman, D.B., B.T. Steven, and N.L. Ward. 2010. Random transposon mutagenesis of Verrucomicrobium spinosum DSM 4136T. Archives of Microbiology 193(4): 307-312, DOI: 10.1007/s00203-010-0666-5.

Wu D., J. Raymond, M. Wu, S. Chatterji, Q. Ren, J.E. Graham, D.A. Bryant, F. Robb, A. Colman, L.J. Tallon, J.H. Badger, R. Madupu, N.L. Ward, and J.A. Eisen. 2009. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS ONE. 4(1):e4207. Epub 2009 Jan 16.

Ward, N.L., J.F. Challacombe, P.H. Janssen, B. Henrissat, P.M. Coutinho, M. Wu, G. Xie, D.H. Haft, M. Sait, J. Badger, R.D. Barabote,, B. Bradley, T.S. Brettin, L.M. Brinkac, D. Bruce, T. Creasy, S.C. Daugherty, T.M Davidsen, R.T. DeBoy, J.C. Detter, R.J. Dodson, A.S. Durkin, A. Ganapathy, M. Gwinn-Giglio, C.S. Han, H. Khouri, H. Kiss, S.P. Kothari, R. Madupu, K. Nelson, W.C. Nelson, I. Paulsen, K. Penn, Q. Ren, M.J. Rosovitz, J.D. Selengut, S. Shrivastava, S.A. Sullivan, R. Tapia, L.S. Thompson,  K.L. Watkins, Q. Yang, C. Yu, N. Zafar, L. Zhou, and C.R. Kuske. 2009. Three genomes from the Phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology 75(7): 2046-56.

Ward, N.L., B. Steven, K. Penn, B.A. Methé, and W.H. Detrich 3rd. 2009. Characterization of the intestinal microbiota of two Antarctic notothenioid fish species. Extremophiles. 13(4):679-85.

Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D,Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL. 2009. The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). PLoS ONE. 2009 Jul 1;4(7):e6085.

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David Williams

Cable, J., K. Ogle, and D.G. Williams. 2011. Contribution of glacier meltwater to streamflow in the Wind River Range, Wyoming inferred via a Bayesian mixing model applied to isotopic measurements. Hydrological Processes, DOI: 10.1002/hyp.7982.

Resco, V., J.P. Ferrio, J.A. Carreira, L. Calvo, P. Casals, A. Ferrero-Serrano, E. Marcos, J. M. Moreno, D.A. Ramírez, M. T. Sebastià, F. Valladares, and D.G. Williams. 2011. The stable isotope ecology of plant succession. Plant Ecology and Diversity doi: 10.1080/17550874.2011.576708

Bachman, S., J.L. Heisler-White, E. Pendall, D.G. Williams, J.A. Morgan and J. Newcomb. 2010. Elevated carbon dioxide alters impacts of precipitation pulses on ecosystem photosynthesis and respiration in a semi-arid grassland. Oecologia DOI 10.1007/s00442-009-1511-x.

English, N.B., D.L. Dettman, D.R. Sandquist, and D.G. Williams. 2010. Daily to decadal patterns of precipitation, humidity, and photosynthetic physiology recorded in the spines of the columnar cactus, Carnegiea gigantea. Journal of Geophysical Research 115, G02013, doi:10.1029/2009JG001008.

Sun, W., V. Resco and D.G. Williams. 2010. Nocturnal and seasonal patterns of carbon isotope composition of leaf dark-respired CO2 differs among dominant species in a semiarid savanna. Oecologia 164:297-310.

Er-Raki, S., A. Chehbouni, G. Boulet, D.G. Williams. 2010. Using the dual approach of FAO-56 for partitioning ET into soil and plant components for olive orchards in a semi-arid region. Agricultural and Water Management 11:1769-1778.

English, N.E., D.L. Dettman, and D.G. Williams. 2010. A 26-year stable isotope record of humidity and El Niño-enhanced precipitation in the spines of saguaro cactus, Carnegiea gigantea. Palaeogeography, Palaeoclimatology, Palaeoecology 293:108-119.

Williams, D.G. and R. Scott. 2009. Vegetation-hydrology interactions: Dynamics of riparian plant water use. pp 37-56. In Stromberg, J. and B. Tellman (eds) Ecology and conservation of the San Pedro River. The University of Arizona Press.

Resco, V., B.E. Ewers, W. Sun, T.E. Huxman, J.F. Weltzin and D.G. Williams. 2009. Drought-induced hydraulic limitations constrain leaf gas exchange responses to precipitation pulses in the C3 woody legume, Prosopis velutina. New Phytologist 81:672-682.

Sharma, S. and D.G. Williams. 2009. Carbon and oxygen isotope analysis of leaf biomass reveals contrasting photosynthetic responses to elevated CO2 near geologic vents in Yellowstone National Park. Biogeosciences 6:25-31.

Cernusak, L.A., G. Tcherkez, C. Keitel, W.K. Cornwell, L.S. Santiago, A. Knohl, M.M. Barbour, D.G. Williams, P.B. Reich, D.S. Ellsworth, T.E. Dawson, H.G. Griffiths, G.D. Farquhar, I.J. Wright and M. Westoby. 2009. Why are non-photosynthetic tissues generally 13C enriched compared to leaves in C3 plants? Review and synthesis of current hypotheses. Functional Plant Biology 36:199-213.

Sun, W., V. Resco, and D.G. Williams. 2009. Diurnal and seasonal variation in the carbon isotope composition of leaf dark-respired CO2 in velvet mesquite (Prosopis velutina). Plant, Cell and Environment 32:1390-1400.

Edwards, C., M. Haselhorst, A. Mcknite, B.E. Ewers, D.G. Williams, C. Weinig. 2009. Genotypes of Brassica rapa respond differently to plant-induced variation in air CO2 concentration in growth chambers with standard and enhanced venting. Theoretical and Applied Genetics 119:991-1004.

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Program in Ecology

Transdisciplinary Program

Debbie Swierczek, Program Coordinator

School of Graduate Education
Knight Hall 247

Phone: 307-766-4128

Email: ecology@uwyo.edu

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