Main hub. I suggest setting a bookmark to this page.  RELOAD/REFRESH FROM TIME TO TIME!!  
            Jump to web page navigation help note
      Underlined text is generally hot linked (mostly blue; some blue text in internal pages is not underlined and not hot linked) 

Homework 6 will be able on WyoWeb on Tuesday 8-Apr-08.  Due Tu. 15-Apr-08. 

        Electronic submission to: popecol@uwyo.edu

Course calendar as downloadable Excel spreadsheet

How to gain access to required readings and other files   

Jump to area for additional downloads (including links to movies of the discrete logistic for various r values

                                       McDonald home page

Lecture Notes

Go to Lecture 1 (14-Jan-08)        [Introduction to the course]
Go to Lecture 2 (16-Jan-08)      [Kaibab deer; the scientific method]
Go to Lecture 3 (18-Jan-08)      [Models, experiments, pseudoscience]

21-Jan-08 Martin Luther King Holiday
Go to Lecture 4 (23-Jan-08)      [How to learn, inflow, outflow, stability, introduction to exponential growth]
Go to Lecture 5 (25-Jan-08)      [Logistic growth, lags, patterns of variation in l (little r)]

Go to Lecture 6 (28-Jan-08)       [More on the logistic equation; Populations: definitions,
                                                               characteristics, processes, and limits]
Go to Lecture 7 (30-Jan-08)       [Dynamics of populations; Population estimation (web only)] 
Go to Lecture 8 (1-Feb-08)       [Intro. to demography, Type I-III survivorship curves, patterns of mortality, Simpson's paradox.]

Go to Lecture 9 (4-Feb-08)       [Patterns of survival and mortality, part 2]
Go to Lecture 10 (6-Feb-08)     [Sex ratios, Natality]
Go to Lecture 11 (8-Feb-08)     [Intro. to matrix population models]

Go to Lecture 12 (11-Feb-08)    [Matrix models (cont.). Formulation, age class vs. age, life cycle graph, outputs]
Go to Lecture 13  (13-Feb-08)   [Graphs and equations]
End of material for Exam 1       Exam 1 Friday 15-Feb-08

Go to Lecture 14 (18-Feb-08)    [Matrix models cont. Ferret matrix, approach to equilibrium] 
Go to Lecture 15 (20-Feb-08)    [Sage-Grouse case history -- stage-classified models]
"Lecture 15a"     (22-Feb-08)     Exam discussion (commonly missed questions on Exam 1) 

Go to Lecture 16 (25-Feb-08)    [Adding stochasticity to matrix models -- stochastic population fluctuations]
Go to Lecture 17 (27-Feb-08)    [Intraspecific competition; discrete logistic, chaos -- deterministic population fluctuations]   
         Movies below apply to Lectures 16 & 17
         Go to movie of discrete logistic 2-cycle (r = 2.2) case   Go to movie of discrete logistic chaos (r = 3) case
                  Go to movie of discrete logistic converge-to-K (r = 1.5) case
Go to Lecture 18 (29-Feb-08)    [Discrete logistic -- initial conditions, experimentally induced chaos]

Go to Lecture 19 (3-Mar-08)    [Interspecific competition -- niche, character release, limiting similarity]
Go to Lecture 20 (5-Mar-08)    [Lotka-Volterra 2-spp. competition equations; isoclines; competitive coexistence]
Mid-semester break 7-Mar. No class.

Go to Lecture 21 (10-Mar-08)     [More on Lotka-Volterra trajectories]
Go to Lecture 22 (12-Mar-08)      [Intro. to predation; functional & numeric response; mesopredator ecological release]
Go to Lecture 23 (14-Mar-08)      [Lotka-Volterra predator-prey cycles]

Spring Break 17-21-Mar-08

Go to Lecture 24 (24-Mar-08)    [Logistic prey growth; stable and unstable configurations]
Go to Lecture 25  (26-Mar-08)    [Harvest models]
Fri 28-Mar-08 will be an in-class review session for Exam 2 
End of material for Exam 2

Exam 2 Monday 31-Mar-08
Go to Lecture 26 (2-Apr-08)     [Experimental and empirical studies of competition and predation]
Go to Lecture 27 (4-Apr-08)    [Population regulation]

Go to Lecture 28 (7-Apr-08)      [Turchin et al. paper on lemmings as predators]
Go to Lecture 29  (9-Apr-08)     [Density-dependent vs. density-independent regulation -- graphical]
Go to Lecture 30  (11-Apr-08)     [Population regulation -- empirical experimental case histories]  

Go to Lecture 31  (14-Apr-08)     [Wrapup of population regulation. Infectious disease model]
Go to Lecture 32  (16-Apr-08)   [Infectious disease model -- solving equations with too many unknowns by using known bounds]
Go to Lecture 33  (18-Apr-08)   [Infectious disease model -- graphical approaches; smooth or oscillatory convergence to I*]

Lectures beyond this point are not yet updated for 2008

Go to Lecture 34  (21-Apr-08)  TBA  (this is the older population genetics lecture, which I may not cover this year)

Powerpoints for the remaining lectures (and the corresponding assigned original papers in Nature or Science) will be available on the WyoWeb course file site

2-May-08 In-class review of material since Exam 2. 

Final exam is FRIDAY 9-May-08 1:15 to 3:15 in CR 215 (our regular classroom)

I will try to post "nearly final" web notes approximately 1 week ahead of scheduled lectures.
I will often revise the notes after I give a lecture, so that it more closely reflects what I actually covered in class. 
Look for a "revised dd-mmm-yy" message so that you can tell whether anything you want to print out is the " latest version".

     Go to list of required readings          Go to list of suggested readings    Download syllabus (excluding calendar page and reading list)      

Go to web page for Poisson distribution and patterns of dispersion (background for Homework # 2 and # 4)

Download Excel demo of time-step analysis   (HW4, trajectories for N₁, N₂, 1D map)

Go to web page for Poisson distribution and patterns of dispersion (items related to Homeworks # 2 and # 4)

Jump to reading list, syllabus and course calendar    Download RTF document for In-class clicker instructions

Excel tutorial

Download Word doc. giving some tips for working with Excel     Download example Excel spreadsheet

Download Word document for Excel workshop      Download Excel spreadsheet w/ prairie dog data

Download demo. of Excel charting of X-Y data with linear regression

Other downloads

I have posted an example of a neatly organized answer to Homework 1 and an Excel (2 sheets in one workbook) for calculations and plots related to HW1 in the WyoWeb folder.

Go to glossary of terms used in matrix algebra      

Go to movie of discrete logistic 2-cycle (r = 2.2) case        Go to movie of discrete logistic chaos (r = 3) case

Go to movie of discrete logistic converge-to-K (r = 1.5) case

Unstable coexistence "movie"    Stable coexistence movie, Case 1    Stable coexistence Case 2

Download Excel demo of time-step analysis   (HW4, trajectories for N₁, N₂, 1D map)

Download a Word document containing a few sample questions (and their answers) from Exam 1 '03

Go to Glossary of genetic terms       Go to worked F_ST calculation web page.

Go to Excel spreadsheet for calculating gene frequencies and local inbreeding coefficient from genotypic counts

Office hours W 10:00-12:00, Th 1:30-2:30 or by appointment

Office hours       M 8-11 or by appointment

Figures, Equations and Required Readings are labeled in a "chapter-like" manner, with each lecture as the equivalent of a chapter.  That is, Lecture 1's web page will be "Chapter 1".  All Figures in that web page will be numbered Fig. 1.1, 1.2, ...1.n for the n Figures it includes.  The same will be true for Equations (numbers for which will be toward the right-hand margin).  I will try to hot link most references to Figures or Equations WITHIN a web page, but may not do so BETWEEN web pages.  That is, a reference to Eqn 1.1 in the 2nd web page ("Chapter 2") might require you to jot that number down and surf back later.  The hot links will be the standard underline format.  I will have links between all the web pages that I design for this course.  I may even put in some external links. Come see me if you need help on browsing the web pages.  Please let us know, also, if you find typos, pages that won't print properly, or other glitches.
Reading numbers may change if the lecture schedule shifts -- the updated list of number will be reposted occasionally both on the web and in the Reading Folder.

Finding required readings:

You can download various required readings (in PDF format) and other files by going to WyoWeb.

1) Go to the WyoWeb page (by going to the UW home page and clicking the WyoWeb link)
2) Log in (your campus username and password)
3) Click the "Student" tab near the top of the page
4) Near the upper left of the resulting window you should see a box that says "My Courses."
Click on the blue words "For Spring 2008 courses, click here"
5) In the next page, the biggest area should be labeled "Courses I'm taking"
6) Hit the "Population Ecology" link
7) On the Population Ecology page, the box near the upper left will have a link called "Files."  Click that. 
8) That will bring up a window that has a list of subfolders.  Choices include “Required” (set of required readings other than those from the Gotelli text), “Suggested” (recommended, but not required) and “Handouts” (most of these will be given out as hard copies in class).  Click the subfolders then the file links to download them.

Required readings are listed by the author's name and then, just before the ".pdf" extension, with the ID number for the reading.  The ID number is roughly equivalent to the Lecture number in the syllabus.  For example, "Crooks_mesopredator21c.pdf" is Reading # 21c, Kevin Crooks's paper on mesopredator release, which I plan to discuss in Lecture 21.